Tools and links

General

Github: https://github.com/xzhang03

Photometry

Nanosec photometry package (hardware and software): https://github.com/xzhang03/NidaqGUI

PicoDAQ (data acquisition hardware integrated in Nanosec): https://github.com/xzhang03/picodaq

ADS131M04 library (needed for PicoDAQ): https://github.com/xzhang03/Pico-ADS131M04

Photometry analysis: https://github.com/xzhang03/Photometry_analysis

Behavior

Mouse feeding controller: https://github.com/xzhang03/DumberboxPCB

2p imaging

Slice optogenetics controller and LED driver: https://github.com/xzhang03/bPACstim

TIFF-based 2p image analysis: https://github.com/xzhang03/Tiff_preprocess_2023

Image local normalize: https://github.com/xzhang03/Local-normalize

Speed-optimized implementation of non-rigid image registration: https://github.com/xzhang03/Demonsreg-Oneshot

From 2p to 2p-GRIN imaging: https://docs.google.com/document/d/13PJGM89u6KQd-XrydpazPOiJ2AtRUcI3hfoM9BLbJb8/edit?tab=t.0#heading=h.3sqtgadytscj

2p-FLIM imaging

FLIM analysis: https://github.com/xzhang03/SPC_analysis

Algorithms for FLIM lifetime estimations: https://docs.google.com/document/d/1OO3A8xkE1MQE7SiAflvSLLlm1l8yoXMXExKlwtyedHU/edit?usp=sharing

FLIM SNR considerations: https://docs.google.com/document/d/1Xku6FVxzI6DhvIuQ-7xB5eHbvvG88PQTqQ81sS5iwsU/edit?tab=t.0#heading=h.s3jkk8ul6clj

Statistics

Jeffrey’s confidence interval: https://github.com/xzhang03/Jeffi

Molecular Biology

biPAC (Collaboration with Georg Nagel and Shiqiang Gao): https://www.addgene.org/169127/

PDE4D3-Cat (Collaboration with Georg Nagel and Shiqiang Gao): https://www.addgene.org/169128/

Drosophila related

Sleep analysis (Rogulja lab): https://github.com/CrickmoreRoguljaLabs/SleepAnalysis

Fly mating video analysis (Crickmore lab): https://github.com/CrickmoreRoguljaLabs/FlyKnight